PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g024010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 242aa    MW: 26133.7 Da    PI: 7.5999
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g024010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.51.6e-312103197
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++     p++q +++ +v+k+FG++ ++++++a+pe + +++++sl+yeA+ r+ +Pv+Gavg++++++++++q+
  Csa06g024010.1   2 SCNGCRVLRKGCSENCILRPCIqwiepPEAQGHATVFVAKFFGRAGLMSFISAVPEPQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNICQA 96 
                     6*************************99999**************************************************************** PP

          DUF260  91 kaelall 97 
                     ++e++l+
  Csa06g024010.1  97 AVETVLR 103
                     *999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.411107IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-262101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIEPPE AQGHATVFVA KFFGRAGLMS FISAVPEPQC  60
PALFQSLLYE ACGRTVNPVN GAVGLLWTGN WNICQAAVET VLRGGSLKPI PELLNGGGAG  120
FAGFPSPTSD EASEICTEML NLRKDDSGDR NIYHHCRFSS SRTRSTASPP KRKRLTSEQP  180
SSELDLSLIP TFPIKTAPLK EDTPSMYSED SVTTVSFRDN IAGDRYVRGG GETAKLLNLF  240
A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0857610.0AY085761.1 Arabidopsis thaliana clone 17840 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010515360.11e-180PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN231e-152LBD38_ARATH; LOB domain-containing protein 38
TrEMBLR0HL691e-165R0HL69_9BRAS; Uncharacterized protein
STRINGscaffold_502015.11e-155(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82128122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-141LOB domain-containing protein 38